430 citations · 1.3k across the 16 of their papers we have counts for
17 papers
Hierarchical Bayesian calibration of mesoscopic models for ultrasound contrast agents from force spectroscopy data
Brieuc Benvegnen, Nikolaos Ntarakas, Tilen Potisk +2
Ultrasound-guided drug and gene delivery (USDG) is a promising non-invasive approach for targeted therapeutic applications. Mechanical properties of encapsulated microbubbles (EMBs…
Virtual ultrasound machine operating in a GHz to MHz frequency range for particle-based biomedical simulations
Urban Čoko, Tilen Potisk, Matej Praprotnik
Ultrasound-matter interactions underpin numerous biomedical and soft-matter applications, yet simulating these phenomena is challenging due to the large separation of viscous and s…
Dissipative particle dynamics models of encapsulated microbubbles and gas vesicles for biomedical ultrasound simulations
Nikolaos Ntarakas, Maša Lah, Daniel Svenšek +2
Ultrasound-guided drug and gene delivery (usdg) enables controlled and spatially precise delivery of drugs and macromolecules, encapsulated in microbubbles (embs) and submicron gas…
The need to implement FAIR principles in biomolecular simulations
Rommie Amaro, Johan Åqvist, Ivet Bahar +125
This letter illustrates the opinion of the molecular dynamics (MD) community on the need to adopt a new FAIR paradigm for the use of molecular simulations. It highlights the necess…
Accelerated Simulations of Molecular Systems through Learning of their Effective Dynamics
Pantelis R. Vlachas, Julija Zavadlav, Matej Praprotnik +1
Simulations are vital for understanding and predicting the evolution of complex molecular systems. However, despite advances in algorithms and special purpose hardware, accessing t…
Density--nematic coupling in isotropic linear polymers
Aleksandar Popadić, Daniel Svenšek, Rudolf Podgornik +1
Linear polymers and other connected "line liquids" exhibit a coupling between density and equilibrium nematic order on the macroscopic level that gives rise to a Meyer-de Gennes ve…