1 citations · 2 across the 5 of their papers we have counts for
5 papers
Phylogenetics in a warm place: computational aspects of the Tropical Grassmannian
Samir Bhatt, John Sabol, Papri Dey +3
Phylogenetic trees provide a fundamental representation of evolutionary relationships, yet the combinatorial explosion of possible tree topologies renders inference computationally…
phylo2vec: a library for vector-based phylogenetic tree manipulation
Neil Scheidwasser, Ayush Nag, Matthew J Penn +6
Phylogenetics is a fundamental component of evolutionary analysis frameworks in biology and linguistics. Recently, the advent of large-scale genomics and the SARS-CoV-2 pandemic ha…
Generalised Bayesian distance-based phylogenetics for the genomics era
Matthew J. Penn, Neil Scheidwasser, Mark P. Khurana +3
As whole genomes become widely available, maximum likelihood and Bayesian phylogenetic methods are demonstrating their limits in meeting the escalating computational demands. Conve…
Contrastive Deep Learning Reveals Age Biomarkers in Histopathological Skin Biopsies
Kaustubh Chakradeo, Pernille Nielsen, Lise Mette Rahbek Gjerdrum +5
As global life expectancy increases, so does the burden of chronic diseases, yet individuals exhibit considerable variability in the rate at which they age. Identifying biomarkers…
BayesAgent: Bayesian Agentic Reasoning Under Uncertainty via Verbalized Probabilistic Graphical Modeling
Hengguan Huang, Xing Shen, Songtao Wang +5
Human cognition excels at transcending sensory input and forming latent representations that structure our understanding of the world. While Large Language Model (LLM) agents demon…