334 citations · 419 across the 14 of their papers we have counts for
14 papers
Towards Spatial Transcriptomics-driven Pathology Foundation Models
Konstantin Hemker, Andrew H. Song, Cristina Almagro-Pérez +6
Spatial transcriptomics (ST) provides spatially resolved measurements of gene expression, enabling characterization of the molecular landscape of human tissue beyond histological a…
NOVA: An Agentic Framework for Automated Histopathology Analysis and Discovery
Anurag J. Vaidya, Felix Meissen, Daniel C. Castro +7
Digitized histopathology analysis involves complex, time-intensive workflows and specialized expertise, limiting its accessibility. We introduce NOVA, an agentic framework that tra…
MEDEQUALQA: Evaluating Biases in LLMs with Counterfactual Reasoning
Rajarshi Ghosh, Abhay Gupta, Hudson McBride +2
Large language models (LLMs) are increasingly deployed in clinical decision support, yet subtle demographic cues can influence their reasoning. Prior work has documented disparitie…
A Foundation Model for Spatial Proteomics
Muhammad Shaban, Yuzhou Chang, Huaying Qiu +57
Foundation models have begun to transform image analysis by acting as pretrained generalist backbones that can be adapted to many tasks even when post-training data are limited, ye…
Evidence-based diagnostic reasoning with multi-agent copilot for human pathology
Luca L. Weishaupt, Chengkuan Chen, Drew F. K. Williamson +8
Pathology is experiencing rapid digital transformation driven by whole-slide imaging and artificial intelligence (AI). While deep learning-based computational pathology has achieve…
Accelerating Data Processing and Benchmarking of AI Models for Pathology
Andrew Zhang, Guillaume Jaume, Anurag Vaidya +2
Advances in foundation modeling have reshaped computational pathology. However, the increasing number of available models and lack of standardized benchmarks make it increasingly c…
Molecular-driven Foundation Model for Oncologic Pathology
Anurag Vaidya, Andrew Zhang, Guillaume Jaume +15
Foundation models are reshaping computational pathology by enabling transfer learning, where models pre-trained on vast datasets can be adapted for downstream diagnostic, prognosti…
Multimodal Whole Slide Foundation Model for Pathology
Tong Ding, Sophia J. Wagner, Andrew H. Song +20
The field of computational pathology has been transformed with recent advances in foundation models that encode histopathology region-of-interests (ROIs) into versatile and transfe…
Multistain Pretraining for Slide Representation Learning in Pathology
Guillaume Jaume, Anurag Vaidya, Andrew Zhang +7
Developing self-supervised learning (SSL) models that can learn universal and transferable representations of H&E gigapixel whole-slide images (WSIs) is becoming increasingly valua…
Composable Interventions for Language Models
Arinbjorn Kolbeinsson, Kyle O'Brien, Tianjin Huang +8
Test-time interventions for language models can enhance factual accuracy, mitigate harmful outputs, and improve model efficiency without costly retraining. But despite a flood of n…
Multimodal Prototyping for cancer survival prediction
Andrew H. Song, Richard J. Chen, Guillaume Jaume +3
Multimodal survival methods combining gigapixel histology whole-slide images (WSIs) and transcriptomic profiles are particularly promising for patient prognostication and stratific…
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis
Guillaume Jaume, Paul Doucet, Andrew H. Song +8
Spatial transcriptomics enables interrogating the molecular composition of tissue with ever-increasing resolution and sensitivity. However, costs, rapidly evolving technology, and…
Transcriptomics-guided Slide Representation Learning in Computational Pathology
Guillaume Jaume, Lukas Oldenburg, Anurag Vaidya +5
Self-supervised learning (SSL) has been successful in building patch embeddings of small histology images (e.g., 224x224 pixels), but scaling these models to learn slide embeddings…
Artificial Intelligence for Digital and Computational Pathology
Andrew H. Song, Guillaume Jaume, Drew F. K. Williamson +4
Advances in digitizing tissue slides and the fast-paced progress in artificial intelligence, including deep learning, have boosted the field of computational pathology. This field…