activity
20232026
most citedProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding

7 citations · 23 across the 10 of their papers we have counts for

collaborators

10 papers

cs.CV2026

When Seeing Overrides Knowing: Visual Dominance and Deferral-Based Method for Personalized Safety in VLMs

Edward Sun, Yuchen Wu, Zixian Ma +7

Vision-language models (VLMs) are increasingly deployed in high-stakes settings, where a response that is reasonable in general may still be unsafe for a particular user whose medi…

cs.CL2025

BioVerge: A Comprehensive Benchmark and Study of Self-Evaluating Agents for Biomedical Hypothesis Generation

Fuyi Yang, Chenchen Ye, Mingyu Derek Ma +3

Hypothesis generation in biomedical research has traditionally centered on uncovering hidden relationships within vast scientific literature, often using methods like Literature-Ba…

q-bio.BM2025★ 2 cited

Protein Large Language Models: A Comprehensive Survey

Yijia Xiao, Wanjia Zhao, Junkai Zhang +12

Protein-specific large language models (Protein LLMs) are revolutionizing protein science by enabling more efficient protein structure prediction, function annotation, and design.…

cs.SE2025

CSR-Bench: Benchmarking LLM Agents in Deployment of Computer Science Research Repositories

Yijia Xiao, Runhui Wang, Luyang Kong +2

The increasing complexity of computer science research projects demands more effective tools for deploying code repositories. Large Language Models (LLMs), such as Anthropic Claude…

q-fin.TR2024★ 6 cited

TradingAgents: Multi-Agents LLM Financial Trading Framework

Yijia Xiao, Edward Sun, Di Luo +1

Significant progress has been made in automated problem-solving using societies of agents powered by large language models (LLMs). In finance, efforts have largely focused on singl…

q-bio.GN2024★ 1 cited

RNA-GPT: Multimodal Generative System for RNA Sequence Understanding

Yijia Xiao, Edward Sun, Yiqiao Jin +1

RNAs are essential molecules that carry genetic information vital for life, with profound implications for drug development and biotechnology. Despite this importance, RNA research…

cs.AI2024★ 7 cited

ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding

Yijia Xiao, Edward Sun, Yiqiao Jin +2

Understanding biological processes, drug development, and biotechnological advancements requires a detailed analysis of protein structures and functions, a task that is inherently…

cs.AI2024★ 2 cited

LogicVista: Multimodal LLM Logical Reasoning Benchmark in Visual Contexts

Yijia Xiao, Edward Sun, Tianyu Liu +1

We propose LogicVista, an evaluation benchmark that assesses the integrated logical reasoning capabilities of multimodal large language models (MLLMs) in Visual contexts. Recent ad…

cs.LG2023★ 2 cited

PGraphDTA: Improving Drug Target Interaction Prediction using Protein Language Models and Contact Maps

Rakesh Bal, Yijia Xiao, Wei Wang

Developing and discovering new drugs is a complex and resource-intensive endeavor that often involves substantial costs, time investment, and safety concerns. A key aspect of drug…

cs.CL2023★ 3 cited

PrivacyMind: Large Language Models Can Be Contextual Privacy Protection Learners

Yijia Xiao, Yiqiao Jin, Yushi Bai +10

The proliferation of Large Language Models (LLMs) has driven considerable interest in fine-tuning them with domain-specific data to create specialized language models. Nevertheless…