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researcher

Tomáš Helikar

3 papers hereh-index 5231 citations17 works total

Matching runs newest-first, so older work may not be attached to this profile yet.

author position
  • middle author1
  • last author1

Across the 2 of 3 papers where every author was matched, so the position is known.

fields
  • q-bio.OT2
  • q-bio.QM1

identity via Semantic Scholar / OpenAlex

most citedFrom FAIR to CURE: Guidelines for Computational Models of Biological Systems

4 citations · 4 across the 2 of their papers we have counts for

collaborators

3 papers

q-bio.OT2026

MarkerScout: A Disease-Agnostic Machine Learning Framework for Biomarker Prediction from Multi-Scale Mechanistic Models

Robert Moore, Frank Agayie-Ntim, Lindsey B. Crawford +5

We demonstrate the framework on three infectious diseases derived from a companion mechanistic immune-simulation platform: SARS-CoV-2, Influenza A Virus, and Plasmodium falciparum.…

q-bio.QM2026

MechAInistic: An LLM-guided Multi-Agent System for Reasoning over Genome-Scale Constraint-Based Metabolic Models

Josh Loecker, Narayna Puraja, William Bryan +3

Constraint-based metabolic modeling is a powerful way to study the mechanistic basis of cellular states and disease, but its effective use demands substantial computational experti…

q-bio.OT2025★ 4 cited

From FAIR to CURE: Guidelines for Computational Models of Biological Systems

Herbert M. Sauro, Eran Agmon, Michael L. Blinov +48

Guidelines for managing scientific data have been established under the FAIR principles requiring that data be Findable, Accessible, Interoperable, and Reusable. In many scientific…

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Not affiliated with arXiv. Researcher data from Semantic Scholar (ODC-BY) and OpenAlex.