3 citations · 4 across the 6 of their papers we have counts for
8 papers
ALF: An Active Learning Framework for Scientific Discovery
Shikha Surana, Alex Hawkins-Hooker, Olivia Gallup +3
Machine learning for scientific discovery is almost systematically data bound. Producing relevant high quality data, under budget constraints, is amongst the most promising ways to…
Search at the Cost of Sampling: Nearly-Instant Latent Space Bayesian Optimization
Donney Fan, Colin Doumont, Aleksandra Kalisz +4
Generative models are increasingly central to many de novo discovery pipelines, in which designs are generated at scale and filtered through virtual screens to determine a set of c…
How to Spend Your Oracle Budget: Practical Guidance for Protein Structure Prediction Models
Aleksandra Kalisz, Jack Simons, Krisztina Sinkovics +4
Foundation models for protein structure prediction remain unreliable on certain targets. External oracles can flag and correct these failures, but biological oracles are expensive,…
Force-Aware Neural Tangent Kernels for Scalable and Robust Active Learning of MLIPs
Eszter Varga-Umbrich, Zachary Weller-Davies, Paul Duckworth +3
Active learning for machine-learning interatomic potentials (MLIPs) must address several challenges to be practical: scaling to large candidate pools, leveraging energy-force super…
Pretrained Model Representations as Acquisition Signals for Active Learning of MLIPs
Eszter Varga-Umbrich, Shikha Surana, Paul Duckworth +3
Training machine learning interatomic potentials (MLIPs) for reactive chemistry is often bottlenecked by the high cost of quantum chemical labels and the scarcity of transition sta…
Sample-Efficient Optimisation over the Outputs of Generative Models
Samuel Willis, Paul Duckworth, Jack Simons +10
Modern generative AI models, such as diffusion and flow matching models, can sample from rich data distributions. However, many applications, especially in science and engineering,…
Overconfident Oracles: Limitations of In Silico Sequence Design Benchmarking
Shikha Surana, Nathan Grinsztajn, Timothy Atkinson +2
Machine learning methods can automate the in silico design of biological sequences, aiming to reduce costs and accelerate medical research. Given the limited access to wet labs, in…
Metalic: Meta-Learning In-Context with Protein Language Models
Jacob Beck, Shikha Surana, Manus McAuliffe +4
Predicting the biophysical and functional properties of proteins is essential for in silico protein design. Machine learning has emerged as a promising technique for such predictio…