27 citations · 33 across the 4 of their papers we have counts for
4 papers
Folding a protein with equal probability of being helix or hairpin
Chun-Yu Lin, Nan-Yow Chen, Chung-Yu Mou
We explore the possibility for the native state of a protein being inherently a multi-conformation state in an ab initio coarse-grained model. Based on the Wang-Landau algorithm, t…
Monte Carlo simulations of proteins in cages: influence of confinement on the stability of intermediate states
Pedro Ojeda, Aurora Londono, Nan-Yow Chen +1
We present a theoretical study of the folding of small proteins inside confining potentials. Proteins are described in the framework of an effective potential model which contains…
Folding Proteins with Both Alpha and Beta Structures in a Reduced Model
Nan-yow Chen
A reduced model, which can fold both helix and sheet structures, is proposed to study the problem of protein folding. The goal of this model is to find an unbiased effective potent…
Effective potentials for Folding Proteins
Nan-yow Chen, Zheng-Yao Su, Chung-Yu Mou
A coarse-grained off-lattice model that is not biased in any way to the native state is proposed to fold proteins. To predict the native structure in a reasonable time, the model h…