4 papers
VOICE: A Vision-Omics Foundation Model Integrating Direct and Retrieval-Based Prediction of In-situ Single-Cell Gene Expression
Xin Luo, Yicheng Tao, Haoxuan Zeng +6
Spatial transcriptomics can resolve gene expression at single-cell resolution, but it is costly, limited to targeted panels of a few hundred to a few thousand genes, and applicable…
Neighborhood-Aware Dual Biomedical Entity Linking
Yicheng Tao, Jie Liu
Biomedical entity linking grounds mentions in clinical and scientific text to entities in a curated knowledge base (KB) with ontological structure, which supports downstream applic…
GRASP: Plan-Guided Graph Retrieval with Adaptive Fusion and Reranking on Semi-Structured Knowledge Bases
Yicheng Tao, Yiqun Wang, Xiangchen Song +3
Semi-structured knowledge bases (SKBs) embed textual documents in a typed graph of entities and relations, and underpin applications such as product search, academic paper search,…
AutoPCR: Automated Phenotype Concept Recognition by Prompting
Yicheng Tao, Yuanhao Huang, Yiqun Wang +2
Motivation: Phenotype concept recognition (CR) is a fundamental task in biomedical text mining. However, existing methods either require ontology-specific training, making them str…