12 papers
scLLM-DSC: LLM-Knowledge Enhanced Cross-Modal Deep Structural Clustering for Single-Cell RNA Sequencing
Ping Xu, Pengjiang Li, Tian Du +6
Clustering is fundamental to scRNA-seq analysis, serving as a cornerstone for identifying cell populations and resolving tissue heterogeneity. However, existing methods focus on mi…
Dynamic and Adaptive Feature Generation with LLM
Xinhao Zhang, Jinghan Zhang, Banafsheh Rekabdar +3
The representation of feature space is a crucial environment where data points get vectorized and embedded for subsequent modeling. Thus the efficacy of machine learning (ML) algor…
scCluBench: Comprehensive Benchmarking of Clustering Algorithms for Single-Cell RNA Sequencing
Ping Xu, Zaitian Wang, Zhirui Wang +5
Cell clustering is crucial for uncovering cellular heterogeneity in single-cell RNA sequencing (scRNA-seq) data by identifying cell types and marker genes. Despite its importance,…
scUnified: An AI-Ready Standardized Resource for Single-Cell RNA Sequencing Analysis
Ping Xu, Zaitian Wang, Zhirui Wang +7
Single-cell RNA sequencing (scRNA-seq) technology enables systematic delineation of cellular states and interactions, providing crucial insights into cellular heterogeneity. Buildi…
SciTopic: Enhancing Topic Discovery in Scientific Literature through Advanced LLM
Pengjiang Li, Zaitian Wang, Xinhao Zhang +4
Topic discovery in scientific literature provides valuable insights for researchers to identify emerging trends and explore new avenues for investigation, facilitating easier scien…
A Comprehensive Survey on Data Augmentation
Zaitian Wang, Pengfei Wang, Kunpeng Liu +6
Data augmentation is a series of techniques that generate high-quality artificial data by manipulating existing data samples. By leveraging data augmentation techniques, AI models…