9 citations · 16 across the 8 of their papers we have counts for
8 papers
Automating tumor-infiltrating lymphocyte assessment in breast cancer histopathology images using QuPath: a transparent and accessible machine learning pipeline
Masoud Tafavvoghi, Lars Ailo Bongo, André Berli Delgado +5
In this study, we built an end-to-end tumor-infiltrating lymphocytes (TILs) assessment pipeline within QuPath, demonstrating the potential of easily accessible tools to perform com…
Open-source framework for detecting bias and overfitting for large pathology images
Anders Sildnes, Nikita Shvetsov, Masoud Tafavvoghi +5
Even foundational models that are trained on datasets with billions of data samples may develop shortcuts that lead to overfitting and bias. Shortcuts are non-relevant patterns in…
A Lightweight and Extensible Cell Segmentation and Classification Model for Whole Slide Images
Nikita Shvetsov, Thomas K. Kilvaer, Masoud Tafavvoghi +4
Developing clinically useful cell-level analysis tools in digital pathology remains challenging due to limitations in dataset granularity, inconsistent annotations, high computatio…
Deep learning-based classification of breast cancer molecular subtypes from H&E whole-slide images
Masoud Tafavvoghi, Anders Sildnes, Mehrdad Rakaee +4
Classifying breast cancer molecular subtypes is crucial for tailoring treatment strategies. While immunohistochemistry (IHC) and gene expression profiling are standard methods for…
Fast TILs -- A Pipeline for Efficient TILs Estimation in Non-Small Cell Lung Cancer
Nikita Shvetsov, Anders Sildnes, Masoud Tafavvoghi +5
Addressing the critical need for accurate prognostic biomarkers in cancer treatment, quantifying tumor-infiltrating lymphocytes (TILs) in non-small cell lung cancer (NSCLC) present…
Publicly available datasets of breast histopathology H&E whole-slide images: A scoping review
Masoud Tafavvoghi, Lars Ailo Bongo, Nikita Shvetsov +2
Advancements in digital pathology and computing resources have made a significant impact in the field of computational pathology for breast cancer diagnosis and treatment. However,…
A Pragmatic Machine Learning Approach to Quantify Tumor Infiltrating Lymphocytes in Whole Slide Images
Nikita Shvetsov, Morten Grønnesby, Edvard Pedersen +5
Increased levels of tumor infiltrating lymphocytes (TILs) in cancer tissue indicate favourable outcomes in many types of cancer. Manual quantification of immune cells is inaccurate…
Lessons learned developing and using a machine learning model to automatically transcribe 2.3 million handwritten occupation codes
Bjørn-Richard Pedersen, Einar Holsbø, Trygve Andersen +4
Machine learning approaches achieve high accuracy for text recognition and are therefore increasingly used for the transcription of handwritten historical sources. However, using m…