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q-bio.GN2026
Stable-Shift: Biologically Structured Prediction of Transcriptional Responses to Unseen Gene Perturbations
Sajib Acharjee Dip, Liqing Zhang
Predicting transcriptional responses to genetic perturbations could reduce the experimental burden of functional genomics, but extrapolation to genes that were never perturbed duri…
q-bio.GN2025★ 1 cited
CFM-GP: Unified Conditional Flow Matching to Learn Gene Perturbation Across Cell Types
Abrar Rahman Abir, Sajib Acharjee Dip, Liqing Zhang
Understanding gene perturbation effects across diverse cellular contexts is a central challenge in functional genomics, with important implications for therapeutic discovery and pr…