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q-bio.BM2024
UniCorn: A Unified Contrastive Learning Approach for Multi-view Molecular Representation Learning
Shikun Feng, Yuyan Ni, Minghao Li +4
Recently, a noticeable trend has emerged in developing pre-trained foundation models in the domains of CV and NLP. However, for molecular pre-training, there lacks a universal mode…
q-bio.BM2024★ 2 cited
Rethinking Specificity in SBDD: Leveraging Delta Score and Energy-Guided Diffusion
Bowen Gao, Minsi Ren, Yuyan Ni +5
In the field of Structure-based Drug Design (SBDD), deep learning-based generative models have achieved outstanding performance in terms of docking score. However, further study sh…
q-bio.BM2023
Sliced Denoising: A Physics-Informed Molecular Pre-Training Method
Yuyan Ni, Shikun Feng, Wei-Ying Ma +2
While molecular pre-training has shown great potential in enhancing drug discovery, the lack of a solid physical interpretation in current methods raises concerns about whether the…