5 citations · 7 across the 11 of their papers we have counts for
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Conformation and topology of cyclical star polymers
Davide Breoni, Emanuele Locatelli, Luca Tubiana
We study the conformation and topological properties of cyclical star polymers with ring arms, each made of beads. We find that the conformational properties of unlinked cy…
Normalized topological indices discriminate between architectures of branched macromolecules
Domen Vaupotič, Jules Morand, Luca Tubiana +1
Branching architecture characterizes numerous systems, ranging from synthetic (hyper)branched polymers and biomolecules such as lignin, amylopectin, and nucleic acids to tracheal a…
Molecular dynamics characterization of the free and encapsidated RNA2 of CCMV with the oxRNA model
Giovanni Mattiotti, Manuel Micheloni, Lorenzo Petrolli +3
The cowpea chlorotic mottle virus (CCMV) has emerged as an exemplary model system to assess the balance between electrostatic and topological features of ssRNA viruses, specificall…
Meta-plasticity and memory in multi-level recurrent feed-forward networks
Gianmarco Zanardi, Paolo Bettotti, Jules Morand +2
Network systems can exhibit memory effects in which the interactions between different pairs of nodes adapt in time, leading to the emergence of preferred connections, patterns, an…
EXCOGITO, an extensible coarse-graining toolbox for the investigation of biomolecules by means of low-resolution representation
Marco Giulini, Raffaele Fiorentini, Luca Tubiana +2
Bottom-up coarse-grained (CG) models proved to be essential to complement and sometimes even replace all-atom representations of soft matter systems and biological macromolecules.…