52 citations · 238 across the 14 of their papers we have counts for
14 papers
Twist-bend coupling, twist waves and the shape of DNA loops
S. K. Nomidis, M. Caraglio, M. Laleman +3
By combining analytical and numerical calculations, we investigate the minimal-energy shape of short DNA loops of approximately base pairs (bp). We show that in these loops t…
The effect of memory and active forces on transition path times distributions
E. Carlon, H. Orland, T. Sakaue +1
An analytical expression is derived for the transition path time distribution for a one-dimensional particle crossing of a parabolic barrier. Two cases are analyzed: (i) A non-Mark…
Transition path time distributions
M. Laleman, E. Carlon, H. Orland
Biomolecular folding, at least in simple systems, can be described as a two state transition in a free energy landscape with two deep wells separated by a high barrier. Transition…
The heterodimer auto-repression loop: a robust and flexible pulse-generating genetic module
B. Lannoo, E. Carlon, M. Lefranc
We investigate the dynamics of the heterodimer autorepression loop (HAL), a small genetic module in which a protein A acts as an auto-repressor and binds to a second protein B to f…
Unwinding relaxation dynamics of polymers
Jean-Charles Walter, Marco Baiesi, Gerard Barkema +1
The relaxation dynamics of a polymer wound around a fixed obstacle constitutes a fundamental instance of polymer with twist and torque and it is of relevance also for DNA denaturat…
Equilibrium winding angle of a polymer around a bar
Jean-Charles Walter, Gerard Barkema, Enrico Carlon
The winding angle probability distribution of a planar self-avoiding walk has been known exactly since a long time: it has a gaussian shape with a variance growing as $<θ^2>\sim \l…