5 papers
Optimization of Kinetic--Stoichiometric Growth Bounds over Autocatalytic Subnetworks
Víctor Blanco, Gabriel González
Autocatalytic subnetworks govern sustained production and balanced growth in chemical reaction systems and can be naturally represented as directed multihypergraphs that jointly en…
Optimal Embedding of Wiring Diagrams in Constrained Three-Dimensional Spaces
Víctor Blanco, Gabriel González, Justo Puerto
This paper investigates the \emph{Wiring Diagram Problem} (WDP), a three-dimensional layout design problem arising in industrial applications such as cable harness design and pipel…
A Standardized Benchmark for Multilabel Antimicrobial Peptide Classification
Sebastian Ojeda, Rafael Velasquez, Nicolás Aparicio +7
Antimicrobial peptides have emerged as promising molecules to combat antimicrobial resistance. However, fragmented datasets, inconsistent annotations, and the lack of standardized…
Identifying Self-Amplifying Hypergraph Structures through Mathematical Optimization
Víctor Blanco, Gabriel González, Praful Gagrani
In this paper, we introduce the concept of self-amplifying structures for hypergraphs, positioning it as a key element for understanding propagation and internal reinforcement in c…
Fixed Topology Minimum-Length Trees with Neighborhoods
Víctor Blanco, Gabriel González, Justo Puerto
In this paper, we introduce the Fixed Topology Minimum-Length Tree with Neighborhood Problem, which aims to embed a rooted tree-shaped graph into a -dimensional metric space whi…