2 citations · 2 across the 5 of their papers we have counts for
4 papers · 1 filter
Two-Stage Fine-Tuning for Protein Sequence Generation with Targeted Amino-Acid Composition
Violeta Basten-Romero, Rubén Muñoz-Tafalla, Anna María Díaz-Rovira +3
Protein language models are standard priors for biological sequence generation, but steering them toward explicit distributional design targets remains largely unexplored. We study…
Effective Resistance Rewiring: A Simple Topological Correction for Over-Squashing
Bertran Miquel-Oliver, Manel Gil-Sorribes, Victor Guallar +1
Graph Neural Networks struggle to capture long-range dependencies due to over-squashing, where information from exponentially growing neighborhoods must pass through a small number…
ICML Topological Deep Learning Challenge 2024: Beyond the Graph Domain
Guillermo Bernárdez, Lev Telyatnikov, Marco Montagna +70
This paper describes the 2nd edition of the ICML Topological Deep Learning Challenge that was hosted within the ICML 2024 ELLIS Workshop on Geometry-grounded Representation Learnin…
TopoBench: A Framework for Benchmarking Topological Deep Learning
Lev Telyatnikov, Guillermo Bernardez, Marco Montagna +34
This work introduces TopoBench, an open-source library designed to standardize benchmarking and accelerate research in topological deep learning (TDL). TopoBench decomposes TDL int…