81 citations · 89 across the 4 of their papers we have counts for
4 papers
Towards a modeling, optimization and predictive control framework for fed-batch metabolic cybergenetics
Sebastián Espinel-Ríos, Bruno Morabito, Johannes Pohlodek +3
Biotechnology offers many opportunities for the sustainable manufacturing of valuable products. The toolbox to optimize bioprocesses includes \textit{extracellular} process element…
Generalizing diffuse interface methods on graphs: non-smooth potentials and hypergraphs
Jessica Bosch, Steffen Klamt, Martin Stoll
Diffuse interface methods have recently been introduced for the task of semi-supervised learning. The underlying model is well-known in materials science but was extended to graphs…
SBML Qualitative Models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
Claudine Chaouiya, Duncan Berenguier, Sarah M Keating +21
Background: Qualitative frameworks, especially those based on the logical discrete formalism, are increasingly used to model regulatory and signalling networks. A major advantage o…
Computing knock out strategies in metabolic networks
Utz-Uwe Haus, Steffen Klamt, Tamon Stephen
Given a metabolic network in terms of its metabolites and reactions, our goal is to efficiently compute the minimal knock out sets of reactions required to block a given behaviour.…