activity
20242026
most citedDynamic PDB: A New Dataset and a SE(3) Model Extension by Integrating Dynamic Behaviors and Physical Properties in Protein Structures

6 citations · 8 across the 12 of their papers we have counts for

collaborators

14 papers

cs.LG2026

Same Target, Different Origins: Aligning Latent Rollout for Consistent PDE Emulation

Xinying Li, Jing Xu, Wenjun Wang +4

Neural PDE solvers commonly generate multi-step predictions through autoregressive rollout, recursively applying a learned evolution operator and feeding each prediction back as in…

q-bio.QM2026

DyneTrion: A Spatio-temporally Coherent Generative Emulator for Protein Dynamics Across Timescales

Kaihui Cheng, Zhiqiang Cai, Peng Tu +6

Proteins function through coordinated motion across multiple spatial and temporal scales, underpinning processes such as ligand binding, allostery, and catalysis. However, accessin…

cs.AI2026

Mind the Tool Failures: Achieving Synergistic Tool Gains for Medical Agents

Yunhui Gan, Tan Pan, Kaiyu Guo +5

Medical AI agents increasingly use external tools for diagnosis, treatment recommendation, and evidence retrieval, yet most existing approaches assume that task-appropriate tools a…

cs.CV2026

Beyond Instance-Level Self-Supervision in 3D Multi-Modal Medical Imaging

Tan Pan, Shuhao Mei, Yixuan Sun +8

Self-supervised pre-training methods in medical imaging typically treat each individual as an isolated instance, learning representations through augmentation-based objectives or m…

cs.LG2026

Project and Generate: Divergence-Free Neural Operators for Incompressible Flows

Xigui Li, Hongwei Zhang, Ruoxi Jiang +6

Learning-based models for fluid dynamics often operate in unconstrained function spaces, leading to physically inadmissible, unstable simulations. While penalty-based methods offer…

cs.CV2026

Disco: Densely-overlapping Cell Instance Segmentation via Adjacency-aware Collaborative Coloring

Rui Sun, Yiwen Yang, Kaiyu Guo +8

Accurate cell instance segmentation is foundational for digital pathology analysis. Existing methods based on contour detection and distance mapping still face significant challeng…

cs.LG2025

Tracing the Heart's Pathways: ECG Representation Learning from a Cardiac Conduction Perspective

Tan Pan, Yixuan Sun, Chen Jiang +8

The multi-lead electrocardiogram (ECG) stands as a cornerstone of cardiac diagnosis. Recent strides in electrocardiogram self-supervised learning (eSSL) have brightened prospects f…

cs.CV2025

Rethinking Intracranial Aneurysm Vessel Segmentation: A Perspective from Computational Fluid Dynamics Applications

Feiyang Xiao, Yichi Zhang, Xigui Li +7

The precise segmentation of intracranial aneurysms and their parent vessels (IA-Vessel) is a critical step for hemodynamic analyses, which mainly depends on computational fluid dyn…

cs.CV2025

Minimal Semantic Sufficiency Meets Unsupervised Domain Generalization

Tan Pan, Kaiyu Guo, Dongli Xu +8

The generalization ability of deep learning has been extensively studied in supervised settings, yet it remains less explored in unsupervised scenarios. Recently, the Unsupervised…

eess.IV2025

PET2Rep: Towards Vision-Language Model-Drived Automated Radiology Report Generation for Positron Emission Tomography

Yichi Zhang, Wenbo Zhang, Zehui Ling +12

Positron emission tomography (PET) is a cornerstone of modern oncologic and neurologic imaging, distinguished by its unique ability to illuminate dynamic metabolic processes that t…

cs.CV2025

SD-MAD: Sign-Driven Few-shot Multi-Anomaly Detection in Medical Images

Kaiyu Guo, Tan Pan, Chen Jiang +5

Medical anomaly detection (AD) is crucial for early clinical intervention, yet it faces challenges due to limited access to high-quality medical imaging data, caused by privacy con…

eess.IV2025

AneumoBench: A Source-Linked Benchmark for Synthetic-Geometry Transfer in Aneurysm CFD

Xigui Li, Yuanye Zhou, Feiyang Xiao +18

Scientific machine learning uses simulation data to train surrogate models for fast physical-field prediction across geometries. Local shape editing can expand limited geometry col…

q-bio.GN2025★ 2 cited

ChromFound: Towards A Universal Foundation Model for Single-Cell Chromatin Accessibility Data

Yifeng Jiao, Yuchen Liu, Yu Zhang +9

The advent of single-cell Assay for Transposase-Accessible Chromatin using sequencing (scATAC-seq) offers an innovative perspective for deciphering regulatory mechanisms by assembl…

q-bio.BM2024★ 6 cited

Dynamic PDB: A New Dataset and a SE(3) Model Extension by Integrating Dynamic Behaviors and Physical Properties in Protein Structures

Ce Liu, Jun Wang, Zhiqiang Cai +10

Despite significant progress in static protein structure collection and prediction, the dynamic behavior of proteins, one of their most vital characteristics, has been largely over…