activity
20242026
most citedDynamic PDB: A New Dataset and a SE(3) Model Extension by Integrating Dynamic Behaviors and Physical Properties in Protein Structures

6 citations · 8 across the 6 of their papers we have counts for

collaborators

10 papers

physics.chem-ph20261 cited

Suiren-1.0 Technical Report: A Family of Molecular Foundation Models

Junyi An, Xinyu Lu, Yun-Fei Shi +5

We introduce Suiren-1.0, a family of molecular foundation models for the accurate modeling of diverse organic systems. Suiren-1.0 comprising three specialized variants (Suiren-Base…

cs.LG2026

Equivariant Asynchronous Diffusion: An Adaptive Denoising Schedule for Accelerated Molecular Conformation Generation

Junyi An, Chao Qu, Yun-Fei Shi +3

Recent 3D molecular generation methods primarily use asynchronous auto-regressive or synchronous diffusion models. While auto-regressive models build molecules sequentially, they'r…

cs.LG20261 cited

A Pre-trained Reaction Embedding Descriptor Capturing Bond Transformation Patterns

Weiqi Liu, Fenglei Cao, Yuan Qi +1

With the rise of data-driven reaction prediction models, effective reaction descriptors are crucial for bridging the gap between real-world chemistry and digital representations. H…

cs.LG2025

Guiding Diffusion Models with Reinforcement Learning for Stable Molecule Generation

Zhijian Zhou, Junyi An, Zongkai Liu +5

Generating physically realistic 3D molecular structures remains a core challenge in molecular generative modeling. While diffusion models equipped with equivariant neural networks…

cs.LG2025

Equivariant Spherical Transformer for Efficient Molecular Modeling

Junyi An, Xinyu Lu, Chao Qu +6

Equivariant Graph Neural Networks (GNNs) have significantly advanced the modeling of 3D molecular structure by leveraging group representations. However, their message passing, hea…

cs.LG2025

ChemAmp: Amplified Chemistry Tools via Composable Agents

Zhucong Li, Powei Chang, Jin Xiao +6

Although LLM-based agents are proven to master tool orchestration in scientific fields, particularly chemistry, their single-task performance remains limited by underlying tool con…