1 citations · 3 across the 3 of their papers we have counts for
3 papers
q-bio.BM2026★ 1 cited
Atomic Trajectory Modeling with State Space Models for Biomolecular Dynamics
Liang Shi, Jiarui Lu, Junqi Liu +3
Understanding the dynamic behavior of biomolecules is fundamental to elucidating biological function and facilitating drug discovery. While Molecular Dynamics (MD) simulations prov…
cs.LG2026★ 1 cited
Property-driven Protein Inverse Folding With Multi-Objective Preference Alignment
Xiaoyang Hou, Junqi Liu, Chence Shi +3
Protein sequence design must balance designability, defined as the ability to recover a target backbone, with multiple, often competing, developability properties such as solubilit…
q-bio.BM2024★ 1 cited
Design of Ligand-Binding Proteins with Atomic Flow Matching
Junqi Liu, Shaoning Li, Chence Shi +2
Designing novel proteins that bind to small molecules is a long-standing challenge in computational biology, with applications in developing catalysts, biosensors, and more. Curren…