17 citations · 26 across the 5 of their papers we have counts for
5 papers
Inverse Thermodynamics: Designing Interactions for Targeted Phase Behavior
Camilla Beneduce, Giuseppe Mastriani, Petr Šulc +2
The traditional goal of inverse self-assembly is to design interactions that drive particles toward a desired target structure. However, achieving successful self-assembly also req…
How we simulate DNA origami
Sarah Haggenmueller, Michael Matthies, Matthew Sample +1
DNA origami consists of a long scaffold strand and short staple strands that self-assemble into a target 2D or 3D shape. It is a widely used construct in nucleic acid nanotechnolog…
Automating Blueprints for Colloidal Quasicrystal Assembly
Diogo E. P. Pinto, Petr Šulc, Francesco Sciortino +1
One of the frontiers of nanotechnology is advancing beyond the periodic self-assembly of materials. Icosahedral quasicrystals, aperiodic in all directions, represent one of the mos…
Coarse-grained simulations of DNA and RNA systems with oxDNA and oxRNA models: Introductory tutorial
Michael Matthies, Matthew Sample, Petr Šulc
We present a tutorial on setting-up the oxDNA coarse-grained model for simulations of DNA and RNA nanotechnology. The model is a popular tool used both by theorists and experimenta…
Hairygami: Analysis of DNA Nanostructures' Conformational Change Driven by Functionalizable Overhangs
Matthew Sample, Hao Liu, Thong Diep +2
DNA origami is a widely used method to construct nanostructures by self-assembling designed DNA strands. These structures are often used as "pegboards" for templated assembly of pr…