2 papers
cond-mat.soft2024
How we simulate DNA origami
Sarah Haggenmueller, Michael Matthies, Matthew Sample +1
DNA origami consists of a long scaffold strand and short staple strands that self-assemble into a target 2D or 3D shape. It is a widely used construct in nucleic acid nanotechnolog…
physics.bio-ph2023
Coarse-grained simulations of DNA and RNA systems with oxDNA and oxRNA models: Introductory tutorial
Michael Matthies, Matthew Sample, Petr Šulc
We present a tutorial on setting-up the oxDNA coarse-grained model for simulations of DNA and RNA nanotechnology. The model is a popular tool used both by theorists and experimenta…