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cond-mat.soft2023
Inverse design of a pyrochlore lattice of DNA origami through model-driven experiments
Hao Liu, Michael Matthies, John Russo +10
Sophisticated statistical mechanics approaches and human intuition have demonstrated the possibility to self-assemble complex lattices or finite size constructs, but have mostly on…
physics.bio-ph2023
Coarse-grained simulations of DNA and RNA systems with oxDNA and oxRNA models: Introductory tutorial
Michael Matthies, Matthew Sample, Petr Šulc
We present a tutorial on setting-up the oxDNA coarse-grained model for simulations of DNA and RNA nanotechnology. The model is a popular tool used both by theorists and experimenta…