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cs.LG2024

Step-by-Step Guidance to Differential Anemia Diagnosis with Real-World Data and Deep Reinforcement Learning

Lillian Muyama, Estelle Lu, Geoffrey Cheminet +5

Clinical diagnostic guidelines outline the key questions to answer to reach a diagnosis. Inspired by guidelines, we aim to develop a model that learns from electronic health record…

cs.CL2024

Prompting Large Language Models for Supporting the Differential Diagnosis of Anemia

Elisa Castagnari, Lillian Muyama, Adrien Coulet

In practice, clinicians achieve a diagnosis by following a sequence of steps, such as laboratory exams, observations, or imaging. The pathways to reach diagnosis decisions are docu…

q-bio.QM2024

Enhancing Clinical Data Warehouses with Provenance and Large File Management: The gitOmmix Approach for Clinical Omics Data

Maxime Wack, Adrien Coulet, Anita Burgun +1

Background. Clinical data warehouses (CDWs) are essential in the reuse of hospital data in observational studies or predictive modeling. However, state of-the-art CDW systems prese…

cs.CL2024

Facilitating phenotyping from clinical texts: the medkit library

Antoine Neuraz, Ghislain Vaillant, Camila Arias +8

Phenotyping consists in applying algorithms to identify individuals associated with a specific, potentially complex, trait or condition, typically out of a collection of Electronic…

cs.LG2024

Deep Reinforcement Learning for Personalized Diagnostic Decision Pathways Using Electronic Health Records: A Comparative Study on Anemia and Systemic Lupus Erythematosus

Lillian Muyama, Antoine Neuraz, Adrien Coulet

Background: Clinical diagnosis is typically reached by following a series of steps recommended by guidelines authored by colleges of experts. Accordingly, guidelines play a crucial…