3 citations · 12 across the 15 of their papers we have counts for
8 papers · 1 filter
Structured Downsampling for Fast, Memory-efficient Curation of Online Data Streams
Matthew Andres Moreno, Luis Zaman, Emily Dolson
Operations over data streams typically hinge on efficient mechanisms to aggregate or summarize history on a rolling basis. For high-volume data steams, it is critical to manage sta…
Trackable Agent-based Evolution Models at Wafer Scale
Matthew Andres Moreno, Connor Yang, Emily Dolson +1
Continuing improvements in computing hardware are poised to transform capabilities for in silico modeling of cross-scale phenomena underlying major open questions in evolutionary b…
Trackable Island-model Genetic Algorithms at Wafer Scale
Matthew Andres Moreno, Connor Yang, Emily Dolson +1
Emerging ML/AI hardware accelerators, like the 850,000 processor Cerebras Wafer-Scale Engine (WSE), hold great promise to scale up the capabilities of evolutionary computation. How…
A Guide to Tracking Phylogenies in Parallel and Distributed Agent-based Evolution Models
Matthew Andres Moreno, Anika Ranjan, Emily Dolson +1
Computer simulations are an important tool for studying the mechanics of biological evolution. In particular, in silico work with agent-based models provides an opportunity to coll…
Phylotrack: C++ and Python libraries for in silico phylogenetic tracking
Emily Dolson, Santiago Rodriguez-Papa, Matthew Andres Moreno
In silico evolution instantiates the processes of heredity, variation, and differential reproductive success (the three "ingredients" for evolution by natural selection) within dig…
Ecology, Spatial Structure, and Selection Pressure Induce Strong Signatures in Phylogenetic Structure
Matthew Andres Moreno, Santiago Rodriguez-Papa, Emily Dolson
Evolutionary dynamics are shaped by a variety of fundamental, generic drivers, including spatial structure, ecology, and selection pressure. These drivers impact the trajectory of…
Analysis of Phylogeny Tracking Algorithms for Serial and Multiprocess Applications
Matthew Andres Moreno, Santiago Rodriguez Papa, Emily Dolson
Since the advent of modern bioinformatics, the challenging, multifaceted problem of reconstructing phylogenetic history from biological sequences has hatched perennial statistical…
Algorithms for Efficient, Compact Online Data Stream Curation
Matthew Andres Moreno, Santiago Rodriguez Papa, Emily Dolson
Data stream algorithms tackle operations on high-volume sequences of read-once data items. Data stream scenarios include inherently real-time systems like sensor networks and finan…