most citedHoneyBee: A Scalable Modular Framework for Creating Multimodal Oncology Datasets with Foundational Embedding Models

3 citations · 11 across the 8 of their papers we have counts for

collaborators

8 papers

cs.LG2025

EAGLE: Efficient Alignment of Generalized Latent Embeddings for Multimodal Survival Prediction with Interpretable Attribution Analysis

Aakash Tripathi, Asim Waqas, Matthew B. Schabath +2

Accurate cancer survival prediction requires integration of diverse data modalities that reflect the complex interplay between imaging, clinical parameters, and textual reports. Ho…

eess.IV2025

Reliable Radiologic Skeletal Muscle Area Assessment -- A Biomarker for Cancer Cachexia Diagnosis

Sabeen Ahmed, Nathan Parker, Margaret Park +8

Cancer cachexia is a common metabolic disorder characterized by severe muscle atrophy which is associated with poor prognosis and quality of life. Monitoring skeletal muscle area (…

eess.IV2025

Multimodal AI-driven Biomarker for Early Detection of Cancer Cachexia

Sabeen Ahmed, Nathan Parker, Margaret Park +5

Cancer cachexia is a multifactorial syndrome characterized by progressive muscle wasting, metabolic dysfunction, and systemic inflammation, leading to reduced quality of life and i…

eess.IV2024★ 2 cited

Future-Proofing Medical Imaging with Privacy-Preserving Federated Learning and Uncertainty Quantification: A Review

Nikolas Koutsoubis, Asim Waqas, Yasin Yilmaz +3

Artificial Intelligence (AI) has demonstrated significant potential in automating various medical imaging tasks, which could soon become routine in clinical practice for disease di…

cs.LG2024★ 2 cited

Privacy Preserving Federated Learning in Medical Imaging with Uncertainty Estimation

Nikolas Koutsoubis, Yasin Yilmaz, Ravi P. Ramachandran +2

Machine learning (ML) and Artificial Intelligence (AI) have fueled remarkable advancements, particularly in healthcare. Within medical imaging, ML models hold the promise of improv…

q-bio.CB2024★ 2 cited

Embedding-based Multimodal Learning on Pan-Squamous Cell Carcinomas for Improved Survival Outcomes

Asim Waqas, Aakash Tripathi, Paul Stewart +3

Cancer clinics capture disease data at various scales, from genetic to organ level. Current bioinformatic methods struggle to handle the heterogeneous nature of this data, especial…

cs.LG2024★ 2 cited

Self-Normalizing Foundation Model for Enhanced Multi-Omics Data Analysis in Oncology

Asim Waqas, Aakash Tripathi, Sabeen Ahmed +6

Multi-omics research has enhanced our understanding of cancer heterogeneity and progression. Investigating molecular data through multi-omics approaches is crucial for unraveling t…

cs.LG2024★ 3 cited

HoneyBee: A Scalable Modular Framework for Creating Multimodal Oncology Datasets with Foundational Embedding Models

Aakash Tripathi, Asim Waqas, Matthew B. Schabath +2

HONeYBEE (Harmonized ONcologY Biomedical Embedding Encoder) is an open-source framework that integrates multimodal biomedical data for oncology applications. It processes clinical…