4 papers
Semialgebraic Conditions for Identifying Triangles in Phylogenetic Networks
Bryan Currie, Aviva K. Englander, Jose A. Esparza-Lozano +7
An important consideration for a model-based method of phylogenetic network inference is the identifiability of the network parameter of the model. A recurring theme in previous wo…
Routing functions for parameter space decomposition to describe stability landscapes of ecological models
Joseph Cummings, Kyle J. -M. Dahlin, Elizabeth Gross +1
Changes in environmental or system parameters often drive major biological transitions, including ecosystem collapse, disease outbreaks, and tumor development. Analyzing the stabil…
Group-Based Phylogenetic Models on 3-Sunlet Networks
Shelby Cox, Elizabeth Gross, Samuel Martin
Phylogenetic networks describe the evolution of a set of taxa for which reticulate events have occurred at some point in their evolutionary history. Of particular interest is when…
The Pfaffian Structure of CFN Phylogenetic Networks
Joseph Cummings, Elizabeth Gross, Benjamin Hollering +2
Algebraic techniques in phylogenetics have historically been successful at proving identifiability results and have also led to novel reconstruction algorithms. In this paper, we s…