16 citations · 60 across the 15 of their papers we have counts for
6 papers · 1 filter
Rank-and-Reason: Multi-Agent Collaboration Accelerates Zero-Shot Protein Mutation Prediction
Yang Tan, Yuanxi Yu, Can Wu +7
Zero-shot mutation prediction is vital for low-resource protein engineering, yet existing protein language models (PLMs) often yield statistically confident results that ignore fun…
Autoregressive Enzyme Function Prediction with Multi-scale Multi-modality Fusion
Dingyi Rong, Wenzhuo Zheng, Bozitao Zhong +3
Accurate prediction of enzyme function is crucial for elucidating biological mechanisms and driving innovation across various sectors. Existing deep learning methods tend to rely s…
Protein Representation Learning with Sequence Information Embedding: Does it Always Lead to a Better Performance?
Yang Tan, Lirong Zheng, Bozitao Zhong +2
Deep learning has become a crucial tool in studying proteins. While the significance of modeling protein structure has been discussed extensively in the literature, amino acid type…
PDB-Struct: A Comprehensive Benchmark for Structure-based Protein Design
Chuanrui Wang, Bozitao Zhong, Zuobai Zhang +3
Structure-based protein design has attracted increasing interest, with numerous methods being introduced in recent years. However, a universally accepted method for evaluation has…
Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling
Jiarui Lu, Bozitao Zhong, Zuobai Zhang +1
The dynamic nature of proteins is crucial for determining their biological functions and properties, for which Monte Carlo (MC) and molecular dynamics (MD) simulations stand as pre…
DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing
Yangtian Zhang, Zuobai Zhang, Bozitao Zhong +2
Proteins play a critical role in carrying out biological functions, and their 3D structures are essential in determining their functions. Accurately predicting the conformation of…