3 papers
physics.chem-ph2024
Milestoning network refinement by incorporating experimental thermodynamic and kinetic data
Xiaojun Ji, Hao Wang, Wenjian Liu
Milestoning is an accurate and efficient method for rare event kinetics calculations by constructing a continuous-time kinetic network connecting the reactant and product states. H…
physics.chem-ph2024
Kinetic network in Milestoning: Clustering, reduction, and transition path analysis
Ru Wang, Xiaojun Ji, Hao Wang +1
We present a reduction of Milestoning (ReM) algorithm to analyze the high-dimensional Milestoning kinetic network. The algorithm reduces the Milestoning network to low dimensions b…
physics.chem-ph2023
On Committor Functions in Milestoning
Xiaojun Ji, Ru Wang, Hao Wang +1
As an optimal one-dimensional reaction coordinate, the committor function not only describes the probability of a trajectory initiated at a phase space point first reaching the pro…