18 citations · 28 across the 5 of their papers we have counts for
5 papers
Towards A Generative Protein Evolution Machine with DPLM-Evo
Xinyou Wang, Liang Hong, Jiasheng Ye +4
Proteins are shaped by gradual evolution under biophysical and functional constraints. Protein language models learn rich evolutionary constraints from large-scale sequences, and d…
Elucidating the Design Space of Multimodal Protein Language Models
Cheng-Yen Hsieh, Xinyou Wang, Daiheng Zhang +5
Multimodal protein language models (PLMs) integrate sequence and token-based structural information, serving as a powerful foundation for protein modeling, generation, and design.…
DPLM-2: A Multimodal Diffusion Protein Language Model
Xinyou Wang, Zaixiang Zheng, Fei Ye +3
Proteins are essential macromolecules defined by their amino acid sequences, which determine their three-dimensional structures and, consequently, their functions in all living org…
ProteinBench: A Holistic Evaluation of Protein Foundation Models
Fei Ye, Zaixiang Zheng, Dongyu Xue +7
Recent years have witnessed a surge in the development of protein foundation models, significantly improving performance in protein prediction and generative tasks ranging from 3D…
Diffusion Language Models Are Versatile Protein Learners
Xinyou Wang, Zaixiang Zheng, Fei Ye +3
This paper introduces diffusion protein language model (DPLM), a versatile protein language model that demonstrates strong generative and predictive capabilities for protein sequen…