8 citations · 13 across the 12 of their papers we have counts for
12 papers
FRETtranslator: translating FRET traces into RNA structural pathways
Nikolai Hecker, Matthew L. Kahlscheuer, Peter Kerpedjiev +5
Recent genome and transcriptome sequencing projects have unveiled a plethora of highly structured RNA molecules as central mediators of cellular function. Single molecule Forster R…
Distribution of graph-distances in Boltzmann ensembles of RNA secondary structures
Rolf Backofen, Markus Fricke, Manja Marz +2
Large RNA molecules often carry multiple functional domains whose spatial arrangement is an important determinant of their function. Pre-mRNA splicing, furthermore, relies on the s…
RNA-RNA interaction prediction based on multiple sequence alignments
Andrew X. Li, Manja Marz, Jing Qin +1
Many computerized methods for RNA-RNA interaction structure prediction have been developed. Recently, time and space dynamic programming algorithms have become av…
Random -noncrossing partitions
Jing Qin, Christian M. Reidys
In this paper, we introduce polynomial time algorithms that generate random -noncrossing partitions and 2-regular, -noncrossing partitions with uniform probability. A -non…
Random 3-noncrossing partitions
Jing Qin, Christian M. Reidys
In this paper, we introduce polynomial time algorithms that generate random 3-noncrossing partitions and 2-regular, 3-noncrossing partitions with uniform probability. A 3-noncrossi…
Target prediction and a statistical sampling algorithm for RNA-RNA interaction
F. W. D. Huang, J. Qin, C. M. Reidys +1
It has been proven that the accessibility of the target sites has a critical influence for miRNA and siRNA. In this paper, we present a program, rip2.0, not only the energetically…