13 citations · 47 across the 25 of their papers we have counts for
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Irreducibility in RNA structures
Emma Y. Jin, Christian M. Reidys
In this paper we study irreducibility in RNA structures. By RNA structure we mean RNA secondary as well as RNA pseudoknot structures. In our analysis we shall contrast random and m…
On the decomposition of -noncrossing RNA structures
Emma Y. Jin, Christian M. Reidys
An -noncrossing RNA structure can be identified with an -noncrossing diagram over , which in turn corresponds to a vacillating tableaux having at most rows. In t…
-noncrossing RNA structures with arc-length
Emma Y. Jin, Christian M. Reidys
In this paper we enumerate -noncrossing RNA pseudoknot structures with given minimum arc- and stack-length. That is, we study the numbers of RNA pseudoknot structures with arc-l…
RNA-LEGO: Combinatorial Design of Pseudoknot RNA
Emma Y. Jin, Christian M. Reidys
In this paper we enumerate -noncrossing RNA pseudoknot structures with given minimum stack-length. We show that the numbers of -noncrossing structures without isolated base p…
Asymptotic Enumeration of RNA Structures with Pseudoknots
Emma Y. Jin, Christian M. Reidys
In this paper we present the asymptotic enumeration of RNA structures with pseudoknots. We develop a general framework for the computation of exponential growth rate and the sub ex…