103 citations · 110 across the 5 of their papers we have counts for
5 papers
The Stanford RNA Mapping Database for sharing and visualizing RNA structure mapping experiments
Pablo Cordero, Julius Lucks, Rhiju Das
We have established an RNA Mapping Database (RMDB) to enable a new generation of structural, thermodynamic, and kinetic studies from quantitative single-nucleotide-resolution RNA s…
RNA structure characterization from chemical mapping experiments
Sharon Aviran, Julius B. Lucks, Lior Pachter
Despite great interest in solving RNA secondary structures due to their impact on function, it remains an open problem to determine structure from sequence. Among experimental appr…
Python - All a Scientist Needs
Julius B. Lucks
Any cutting-edge scientific research project requires a myriad of computational tools for data generation, management, analysis and visualization. Python is a flexible and extensib…
Genome landscapes and bacteriophage codon usage
Julius B. Lucks, David R. Nelson, Grzegorz Kudla +1
Across all kingdoms of biological life, protein-coding genes exhibit unequal usage of synonmous codons. Although alternative theories abound, translational selection has been accep…
Dynamics of RNA Translocation through a Nanopore
J. B. Lucks, Y. Kafri
We present a simplified model of the dynamics of translocation of RNA through a nanopore which only allows the passage of unbound nucleotides. In particular, we consider the disord…