activity
20022023
most citedSampling rare switching events in biochemical networks

491 citations · 4.4k across the 45 of their papers we have counts for

collaborators
Showing 2009Show all

5 papers · 1 filter

physics.optics2009★ 37 cited

A multi-purpose modular system for high-resolution microscopy at high hydrostatic pressure

Hugh Vass, S. Lucas Black, Eva M. Herzig +3

We have developed a modular system for high-resolution microscopy at high hydrostatic pressure. The system consists of a pressurised cell of volume ~100 microlitres, a temperature…

q-bio.PE2009★ 89 cited

Switching and growth for microbial populations in catastrophic responsive environments

Paolo Visco, Rosalind J. Allen, Satya N. Majumdar +1

Phase variation, or stochastic switching between alternative states of gene expression, is common among microbes, and may be important in coping with changing environments. We use…

cond-mat.soft2009★ 115 cited

Computing stationary distributions in equilibrium and non-equilibrium systems with Forward Flux Sampling

Chantal Valeriani, Rosalind J. Allen, Marco J. Morelli +2

We present a method for computing stationary distributions for activated processes in equilibrium and non-equilibrium systems using Forward Flux Sampling (FFS). In this method, the…

cond-mat.stat-mech2009★ 410 cited

Forward Flux Sampling for rare event simulations

Rosalind J. Allen, Chantal Valeriani, Pieter Rein ten Wolde

Rare events are ubiquitous in many different fields, yet they are notoriously difficult to simulate because few, if any, events are observed in a conventiona l simulation run. Over…

q-bio.MN2009★ 51 cited

DNA looping provides stability and robustness to the bacteriophage lambda switch

Marco J. Morelli, Pieter Rein ten Wolde, Rosalind J. Allen

The bistable gene regulatory switch controlling the transition from lysogeny to lysis in bacteriophage lambda presents a unique challenge to quantitative modeling. Despite extensiv…