176 citations · 1.2k across the 24 of their papers we have counts for
27 papers
Structure, Diffusion, and Relaxation in a Charge-Neutral ProTalpha-Histone H1 Condensate
Aniket Bhattacharya
Condensates formed by oppositely charged intrinsically disordered proteins provide model systems for understanding how transient electrostatic interactions govern structure and dyn…
Exact current blockade maps of dsDNA bound motifs driven through a solitary nanopore using electrokinetic Brownian dynamics
Swarnadeep Seth, Aniket Bhattacharya
We report current blockade (CB) characteristics of molecular motifs residing on a model dsDNA using electrokinetic Brownian dynamics (EKBD) and study the role of the valence of the…
Fine structures of Intrinsically Disordered Proteins
Swarnadeep Seth, Brandon Stine, Aniket Bhattacharya
We report simulation studies of 33 single intrinsically disordered proteins (IDPs) using coarse-grained (CG) bead-spring models where interactions among different amino acids are i…
Universality in conformations and transverse fluctuations of a semi-flexible polymer in a crowded environment
Jacob Bair, Swarnadeep Seth, Aniket Bhattacharya
We study universal aspects of polymer conformations and transverse fluctuations for a single swollen chain characterized by a contour length and a persistence length i…
Discriminating protein tags on dsDNA constructs using a dual Nanopore device
Swarnadeep Seth, Arthur Rand, Walter Reisner +3
We report a novel simulation strategy that enables us to identify key parameters controlling the experimentally measurable characteristics of structural protein tags on dsDNA const…
Knot formation of dsDNA pushed inside a nanochannel
Jan Rothörl, Sarah Wettermann, Peter Virnau +1
Recent experiments demonstrated that knots in single DNA strands can be formed by hydrodynamic compression in a nanochannel. In this letter, we further elucidate the underlying mol…