129 citations · 502 across the 11 of their papers we have counts for
11 papers
A systematic classification of knotoids on the plane and on the sphere
Dimos Goundaroulis, Julien Dorier, Andrzej Stasiak
In this paper we generate and systematically classify all prime planar knotoids with up to 5 crossings. We also extend the existing list of knotoids in and add all knotoids w…
Knoto-ID: a tool to study the entanglement of open protein chains using the concept of knotoids
Julien Dorier, Dimos Goundaroulis, Fabrizio Benedetti +1
The backbone of most proteins forms an open curve. To study their entanglement, a common strategy consists in searching for the presence of knots in their backbones using topologic…
Studies of global and local entanglements of individual protein chains using the concept of knotoids
Dimos Goundaroulis, Julien Dorier, Fabrizio Benedetti +1
We study here global and local entanglements of open protein chains by implementing the concept of knotoids. Knotoids have been introduced in 2012 by Vladimir Turaev as a generaliz…
SBML Qualitative Models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
Claudine Chaouiya, Duncan Berenguier, Sarah M Keating +21
Background: Qualitative frameworks, especially those based on the logical discrete formalism, are increasingly used to model regulatory and signalling networks. A major advantage o…
Supersolid phases of hardcore bosons on the square lattice: Correlated hopping, next-nearest neighbor hopping and frustration
F. Mila, J. Dorier, K. P. Schmidt
We discuss the appearance of supersolid phases for interacting hardcore bosons on the square lattice when, in addition to the standard nearest neighbor hopping and repulsion, corre…
Magnetization plateaux in an extended Shastry-Sutherland model
K. P. Schmidt, J. Dorier, F. Mila
We study an extended two-dimensional Shastry-Sutherland model in a magnetic field where besides the usual Heisenberg exchanges of the Shastry-Sutherland model two additional SU(2)…