activity
20232026
most citedLearning Over Molecular Conformer Ensembles: Datasets and Benchmarks

7 citations · 10 across the 10 of their papers we have counts for

collaborators

13 papers

cs.CE2026

AutoPDEBench: Benchmarking LLM Auto-Research for Neural PDE Solver Design

Ruoyan Li, Wei Wang, Yizhou Sun

Partial differential equations (PDEs) are essential for modeling complex physical systems, and neural solvers have recently emerged as powerful data-driven tools for numerically so…

cs.CE2026

Hybrid Lagrangian-Eulerian Model for Lagrangian Fluid Simulation

Ruoyan Li, Wei Wang, Yizhou Sun

Pure Lagrangian neural simulators offer geometric flexibility and exact advection, making them well-suited for modeling moving domains and free surfaces. However, the absence of a…

cs.CE2026

Generalized Neural Operator for Parametric and Boundary-Value Problems

Ruoyan Li, Yizhou Sun, Wei Wang

Developing foundational neural simulators for Partial Differential Equations (PDEs) requires robust generalization across diverse physical parameters and boundary conditions. Howev…

physics.flu-dyn2025

FD-Bench: A Modular and Fair Benchmark for Data-driven Fluid Simulation

Haixin Wang, Ruoyan Li, Fred Xu +7

Data-driven modeling of fluid dynamics has advanced rapidly with neural PDE solvers, yet a fair and strong benchmark remains fragmented due to the absence of unified PDE datasets a…

cs.CE2025

Self-Guided Diffusion Model for Accelerating Computational Fluid Dynamics

Ruoyan Li, Zijie Huang, Haixin Wang +3

Machine learning methods, such as diffusion models, are widely explored as a promising way to accelerate high-fidelity fluid dynamics computation via a super-resolution process fro…

cs.CL2025

Inferring from Logits: Exploring Best Practices for Decoding-Free Generative Candidate Selection

Mingyu Derek Ma, Yanna Ding, Zijie Huang +3

Generative Language Models rely on autoregressive decoding to produce the output sequence token by token. Many tasks such as preference optimization, require the model to produce t…

cs.LG2024

Graph Fourier Neural ODEs: Modeling Spatial-temporal Multi-scales in Molecular Dynamics

Fang Sun, Zijie Huang, Haixin Wang +4

Accurately predicting long-horizon molecular dynamics (MD) trajectories remains a significant challenge, as existing deep learning methods often struggle to retain fidelity over ex…

cs.LG2024★ 1 cited

Physics-Informed Regularization for Domain-Agnostic Dynamical System Modeling

Zijie Huang, Wanjia Zhao, Jingdong Gao +6

Learning complex physical dynamics purely from data is challenging due to the intrinsic properties of systems to be satisfied. Incorporating physics-informed priors, such as in Ham…

cond-mat.mtrl-sci2024★ 1 cited

Inverse designing metamaterials with programmable nonlinear functional responses in graph space

Marco Maurizi, Derek Xu, Yu-Tong Wang +9

Material responses to static and dynamic stimuli, represented as nonlinear curves, are design targets for engineering functionalities like structural support, impact protection, an…

cs.LG2024

BrainODE: Dynamic Brain Signal Analysis via Graph-Aided Neural Ordinary Differential Equations

Kaiqiao Han, Yi Yang, Zijie Huang +8

Brain network analysis is vital for understanding the neural interactions regarding brain structures and functions, and identifying potential biomarkers for clinical phenotypes. Ho…

cs.LG2024

Causal Graph ODE: Continuous Treatment Effect Modeling in Multi-agent Dynamical Systems

Zijie Huang, Jeehyun Hwang, Junkai Zhang +6

Real-world multi-agent systems are often dynamic and continuous, where the agents co-evolve and undergo changes in their trajectories and interactions over time. For example, the C…

cs.LG2023★ 1 cited

TANGO: Time-Reversal Latent GraphODE for Multi-Agent Dynamical Systems

Zijie Huang, Wanjia Zhao, Jingdong Gao +6

Learning complex multi-agent system dynamics from data is crucial across many domains, such as in physical simulations and material modeling. Extended from purely data-driven appro…

cs.LG2023★ 7 cited

Learning Over Molecular Conformer Ensembles: Datasets and Benchmarks

Yanqiao Zhu, Jeehyun Hwang, Keir Adams +10

Molecular Representation Learning (MRL) has proven impactful in numerous biochemical applications such as drug discovery and enzyme design. While Graph Neural Networks (GNNs) are e…