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When is String Reconstruction using de Bruijn Graphs Hard?
Ben Bals, Sebastiaan van Krieken, Solon P. Pissis +2
The reduction of the fragment assembly problem to (variations of) the classical Eulerian trail problem [Pevzner et al., PNAS 2001] has led to remarkable progress in genome assembly…
cs.DS2025
String Consensus Problems with Swaps and Substitutions
Estéban Gabory, Laurent Bulteau, Gabriele Fici +1
String consensus problems aim at finding a string that minimizes some given distance with respect to an input set of strings. In particular, in the Closest string problem, we are g…