most citedBtrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

620 citations · 664 across the 10 of their papers we have counts for

collaborators

10 papers

math.CO2024★ 8 cited

Multiple consecutive runs of multi-state trials: distributions of patterns

Yong Kong

The pattern is defined to have at least consecutive 's followed by at least consecutive 's, , followed by at least con…

math.CA2024

Adventitious angles problem: the lonely fractional derived angle

Yong Kong, Shaowei Zhang

In the "classical" adventitious angle problem, for a given set of three angles , , and measured in integral degrees in an isosceles triangle, a fourth angle (the deri…

math.CO2024★ 6 cited

Distributions of successions of arbitrary multisets

Yong Kong

By using the matrix formulation of the two-step approach to distributions of patterns in random sequences, recurrence and explicit formulas for the generating functions of successi…

math.CO2024★ 9 cited

Joint distribution of rises, falls, and number of runs in random sequences

Yong Kong

By using the matrix formulation of the two-step approach to the distributions of runs, a recursive relation and an explicit expression are derived for the generating function of th…

math.CO2024★ 9 cited

The m-th Longest Runs of Multivariate Random Sequences

Yong Kong

The distributions of the -th longest runs of multivariate random sequences are considered. For random sequences made up of kinds of letters, the lengths of the runs are sort…

q-bio.GN2014★ 6 cited

Statistical distributions of pyrosequencing

Yong Kong

Pyrosequencing is emerging as one of the important next-generation sequencing technologies. We derive the statistical distributions of this technique in terms of nucleotide probabi…

q-bio.GN2014

Distributions of positive signals in pyrosequencing

Yong Kong

Pyrosequencing is one of the important next-generation sequencing technologies. We derive the distribution of the number of positive signals in pyrograms of this sequencing technol…

q-bio.GN2014★ 1 cited

Length distribution of sequencing by synthesis: fixed flow cycle model

Yong Kong

Sequencing by synthesis is the underlying technology for many next-generation DNA sequencing platforms. We developed a new model, the fixed flow cycle model, to derive the distribu…

q-bio.GN2014★ 5 cited

Statistical distributions of sequencing by synthesis with probabilistic nucleotide incorporation

Yong Kong

Sequencing by synthesis is used in many next-generation DNA sequencing technologies. Some of the technologies, especially those exploring the principle of single-molecule sequencin…

q-bio.GN2014★ 620 cited

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

Yong Kong

Btrim is a fast and lightweight software to trim adapters and low quality regions in reads from ultra high-throughput next-generation sequencing machines. It also can reliably iden…