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cs.AI2026
Learning the Interaction Prior for Protein-Protein Interaction Prediction: A Model-Agnostic Approach
Ziqi Gao, Chenyi Zi, Zijing Liu +3
Protein-protein interactions (PPIs) are fundamental to cellular function and disease mechanisms. Current learning-based PPI predictors focus on learning powerful protein representa…
cs.LG2026
ProteinOPD: Towards Effective and Efficient Preference Alignment for Protein Design
Yulin Zhang, He Cao, Zihao Jiang +6
Designing proteins with desired functions or properties represents a core goal in synthetic biology and drug discovery. Recent advances in protein language models (PLMs) have enabl…
cs.LG2026
RAPTOR: Ridge-Adaptive Logistic Probes
Ziqi Gao, Yaotian Zhu, Qingcheng Zeng +4
Probing studies what information is encoded in a frozen LLM's layer representations by training a lightweight predictor on top of them. Beyond analysis, probes are often used opera…