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20032010
most citedPrediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations

108 citations · 281 across the 6 of their papers we have counts for

collaborators

6 papers

cond-mat.mes-hall2010★ 10 cited

Localized Joule heating produced by ion current focusing through micron-size holes

V. Viasnoff, U. Bockelmann, A. Meller +3

We provide an experimental demonstration that the focusing of ionic currents in a micron size hole connecting two chambers can produce local temperature increases of up to $100^\ci…

q-bio.MN2008★ 5 cited

A comparative evolutionary study of transcription networks

A. L. Sellerio, B. Bassetti, H. Isambert +1

We present a comparative analysis of large-scale topological and evolutionary properties of transcription networks in three species, the two distant bacteria E. coli and B. subtili…

q-bio.MN2007★ 92 cited

Hierarchy and Feedback in the Evolution of the E. coli Transcription Network

M. Cosentino Lagomarsino, P. Jona, B. Bassetti +1

The E.coli transcription network has an essentially feedforward structure, with, however, abundant feedback at the level of self-regulations. Here, we investigate how these propert…

q-bio.MN2006★ 3 cited

Asymptotic Evolution of Protein-Protein Interaction Networks for General Duplication-Divergence Models

Kirill Evlampiev, Herve Isambert

Genomic duplication-divergence events, which are the primary source of new protein functions, occur stochastically at a wide range of genomic scales, from single gene to whole geno…

physics.bio-ph2003★ 108 cited

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations

A. Xayaphoummine, T. Bucher, F. Thalmann +1

Ab initio RNA secondary structure predictions have long dismissed helices interior to loops, so-called pseudoknots, despite their structural importance. Here, we report that many p…

physics.bio-ph2003★ 63 cited

Probing complex RNA structures by mechanical force

S. Harlepp, T. Marchal, J. Robert +4

RNA secondary structures of increasing complexity are probed combining single molecule stretching experiments and stochastic unfolding/refolding simulations. We find that force-ind…