112 citations · 226 across the 15 of their papers we have counts for
18 papers
Generating eukaryotic reference genome assemblies: Earth BioGenome Project quality standards and recommendations
Kerstin Howe, Dolores R. Agius, Tyler Alioto +45
Reference genome assemblies are foundational resources across the biological sciences as they begin to expose the fundamental building blocks of each species and the molecular tool…
Impact Range Assessment (IRA): An Interpretable Sensitivity Measure for Regression Modelling
Jihao You, Dan Tulpan, Jiaojiao Diao +1
While regression models capture the relationship between predictors and the response variable, they often lack intuitive accompanying methods to understand the influence of predict…
Behavior-Specific Filtering for Enhanced Pig Behavior Classification in Precision Livestock Farming
Zhen Zhang, Dong Sam Ha, Gota Morota +1
This study proposes a behavior-specific filtering method to improve behavior classification accuracy in Precision Livestock Farming. While traditional filtering methods, such as wa…
GreenHyperSpectra: A multi-source hyperspectral dataset for global vegetation trait prediction
Eya Cherif, Arthur Ouaknine, Luke A. Brown +7
Plant traits such as leaf carbon content and leaf mass are essential variables in the study of biodiversity and climate change. However, conventional field sampling cannot feasibly…
Fungal Genetic Variants in Oceanic Environments
Sade A. Davenport, Scott H. Harrison
Comparing specific types of organisms as they are found across environmental conditions has helped inform how genes and gene products of these organisms relate to phenotypes and ad…
Website visits can predict angler presence using machine learning
Julia S. Schmid, Sean Simmons, Mark A. Lewis +2
Understanding and predicting recreational angler effort is important for sustainable fisheries management. However, conventional methods of measuring angler effort, such as surveys…
Analyzing recreational fishing effort -- Gender differences and the impact of Covid-19
Julia S. Schmid, Sean Simmons, Mark S. Poesch +2
Recreational fishing is an important economic driver and provides multiple social benefits. To predict fishing activity, identifying variables related to variation, such as gender…
Webpage Views as a Proxy for Angler Pressure and Effort: Insights from Bayesian Networks
Azar Taheri Tayebi, Julia S. Schmid, Sean Simmons +3
Reliable angler activity data inform fisheries management. Traditionally, such data are gathered through surveys, but an innovative cost-effective approach involves utilizing onlin…
Publicly available datasets of breast histopathology H&E whole-slide images: A scoping review
Masoud Tafavvoghi, Lars Ailo Bongo, Nikita Shvetsov +2
Advancements in digital pathology and computing resources have made a significant impact in the field of computational pathology for breast cancer diagnosis and treatment. However,…
Ancestry-specific analyses of genome-wide data confirm the settlement sequence of Polynesia
Alexander G. Ioannidis, Javier Blanco-Portillo, Erika Hagelberg +7
By demonstrating the role that historical population replacements and waves of admixture have played around the world, the genetics work of Reich and colleagues has provided a para…
Radio Dichotomy in Quasars with H FWHM greater than km\,s
A. Chakraborty, A. Bhattacharjee, M. S. Brotherton +3
It has been inferred from large unbiased samples that - of all quasars are radio-loud (RL). Using the quasar catalog from the Sloan Digital Sky Survey, we show that the…
How is model-related uncertainty quantified and reported in different disciplines?
Emily G. Simmonds, Kwaku Peprah Adjei, Christoffer Wold Andersen +40
How do we know how much we know? Quantifying uncertainty associated with our modelling work is the only way we can answer how much we know about any phenomenon. With quantitative s…
The effects of temperature acclimation on swimming performance in the pelagic Mahi-mahi (Coryphaena hippurus)
Rachael M. Heuer, John D. Stieglitz, Christina Pasparakis +3
Mahi-mahi (Coryphaena hippurus) are a highly migratory pelagic fish, but little is known about what environmental factors drive their broad distribution. This study examined how te…
PEtab -- interoperable specification of parameter estimation problems in systems biology
Leonard Schmiester, Yannik Schälte, Frank T. Bergmann +26
Reproducibility and reusability of the results of data-based modeling studies are essential. Yet, there has been -- so far -- no broadly supported format for the specification of p…
Simultaneous Magnetic Particle Imaging and Navigation of large superparamagnetic nanoparticles in bifurcation flow experiments
Florian Griese, Tobias Knopp, Cordula Gruettner +5
Magnetic Particle Imaging (MPI) has been successfully used to visualize the distribution of superparamagnetic nanoparticles within 3D volumes with high sensitivity in real time. Si…
Estimating the size of a hidden finite set: large-sample behavior of estimators
Si Cheng, Daniel J. Eck, Forrest W. Crawford
A finite set is "hidden" if its elements are not directly enumerable or if its size cannot be ascertained via a deterministic query. In public health, epidemiology, demography, eco…
Phylogenetic Profiles as a Unified Framework for Measuring Protein Structure, Function and Evolution
Kyung Dae Ko, Yoojin Hong, Gue Su Chang +3
The sequence of amino acids in a protein is believed to determine its native state structure, which in turn is related to the functionality of the protein. In addition, information…
Language evolution and population Dynamics in a system of two interacting species
Kosmas Kosmidis, John M. Halley, Panos Argyrakis
We use Monte Carlo simulations and assumptions from evolutionary game theory in order to study the evolution of words and the population dynamics of a system comprising two interac…