53 citations · 133 across the 7 of their papers we have counts for
7 papers
TrajPy: empowering feature engineering for trajectory analysis across domains
Maurício Moreira-Soares, Eduardo Mossmann, Rui D. M. Travasso +1
Trajectories, sequentially measured quantities that form a path, are an important presence in many different fields, from hadronic beams in physics to electrocardiograms in medicin…
Identifying critical residues in protein folding: Insights from phi-value and Pfold analysis
P. F. N. Faisca, R. D. M. Travasso, R. C. Ball +1
We apply a simulational proxy of the phi-value analysis and perform extensive mutagenesis experiments to identify the nucleating residues in the folding reactions of two small latt…
Pathways to folding, nucleation events and native geometry
Rui D. M. Travasso, M. M. Telo da Gama, P. F. N. Faisca
We perform extensive Monte Carlo simulations of a lattice model and the Go potential to investigate the existence of folding pathways at the level of contact cluster formation for…
Nucleation phenomena in protein folding: The modulating role of protein sequence
R. D. M. Travasso, P. F. N. Faisca, M. M. Telo da Gama
For the vast majority of naturally occurring, small, single domain proteins folding is often described as a two-state process that lacks detectable intermediates. This observation…
Interface Fluctuations, Burgers Equations, and Coarsening under Shear
Alan J. Bray, Andrea Cavagna, Rui D. M. Travasso
We consider the interplay of thermal fluctuations and shear on the surface of the domains in various systems coarsening under an imposed shear flow. These include systems with nonc…
Dynamics and delocalisation transition for an interface driven by a uniform shear flow
Rui D. M. Travasso, Alan J. Bray, Andrea Cavagna
We study the effect of a uniform shear flow on an interface separating the two broken-symmetry ordered phases of a two-dimensional system with nonconserved scalar order parameter.…