3 papers
q-bio.GN2026
scBench-Long: Verifiable Benchmarking of Long-Horizon Single-Cell Biology
Ian Diks, Zhen Yang, Arjun Banerjee +2
Single-cell studies require analysts to convert raw measurements into specific biological claims through multi-step workflows and integration of metadata, assay context, and auxili…
cs.AI2026
Verifiable Benchmarking of Long-Horizon Spatial Biology
Ian Diks, Harihara Muralidharan, Tim Proctor +1
AI agents are increasingly useful for biological data analysis, but existing benchmarks mostly test broad biological knowledge, executable workflows, or localized analysis steps ra…
q-bio.OT2025
MCPmed: A Call for MCP-Enabled Bioinformatics Web Services for LLM-Driven Discovery
Matthias Flotho, Ian Ferenc Diks, Philipp Flotho +3
Bioinformatics web servers are critical resources in modern biomedical research, facilitating interactive exploration of datasets through custom-built interfaces with rich visualiz…