2 citations · 4 across the 3 of their papers we have counts for
3 papers
Graph-based variant discovery reveals novel dynamics in the human microbiome
Harihara Subrahmaniam Muralidharan, Jacquelyn S Michaelis, Jay Ghurye +4
Sequence differences between the strains of bacteria comprising host-associated and environmental microbiota may play a role in community assembly and influence the resilience of m…
MetaCompass: Reference-guided Assembly of Metagenomes
Tu Luan, Victoria Cepeda, Bo Liu +8
Metagenomic studies have primarily relied on de novo assembly for reconstructing genes and genomes from microbial mixtures. While reference-guided approaches have been employed in…
GraSSRep: Graph-Based Self-Supervised Learning for Repeat Detection in Metagenomic Assembly
Ali Azizpour, Advait Balaji, Todd J. Treangen +1
Repetitive DNA (repeats) poses significant challenges for accurate and efficient genome assembly and sequence alignment. This is particularly true for metagenomic data, where genom…