258 citations · 367 across the 20 of their papers we have counts for
24 papers
Scalable Enumeration of Pareto-optimal Polymers for Computing Equilibrium Concentrations
Archit Patil, Minki Hhan, David Soloveichik
Predicting equilibrium concentrations of molecular complexes is essential for verifying the behavior of engineered DNA systems. However, a finite set of monomer types can in princi…
Amplification at Equilibrium: Structural and Thermodynamic Limitations, and Implementation
Hamidreza Akef, Chia-Yu Sung, Aneesh Vanguri +1
Amplifying weak molecular signals is essential in both natural and engineered biochemical systems. While most amplification schemes operate out of equilibrium, relying on kinetic b…
Harvesting Brownian Motion: Zero Energy Computational Sampling
David Doty, Niels Kornerup, Austin Luchsinger +3
The key factor currently limiting the advancement of computational power of electronic computation is no longer the manufacturing density and speed of components, but rather their…
Optimal Information Encoding in Chemical Reaction Networks
Austin Luchsinger, David Doty, David Soloveichik
Discrete chemical reaction networks formalize the interactions of molecular species in a well-mixed solution as stochastic events. Given their basic mathematical and physical role,…
Thermodynamically Driven Signal Amplification
Joshua Petrack, David Soloveichik, David Doty
The field of chemical computation attempts to model computational behavior that arises when molecules, typically nucleic acids, are mixed together. Thermodynamic binding networks (…
Tight Bounds on the Spooky Pebble Game: Recycling Qubits with Measurements
Niels Kornerup, Jonathan Sadun, David Soloveichik
Pebble games are popular models for analyzing time-space trade-offs. In particular, the reversible pebble game is often applied in quantum algorithms like Grover's search to effici…