37 citations · 43 across the 7 of their papers we have counts for
3 papers · 1 filter
Ensemble-based characterization of unbound and bound states on protein energy landscape
Anatoly M. Ruvinsky, Tatsiana Kirys, Alexander V. Tuzikov +1
Characterization of protein energy landscape and conformational ensembles is important for understanding mechanisms of protein folding and function. We studied ensembles of bound a…
Structure fluctuations and conformational changes in protein binding
Anatoly M. Ruvinsky, Tatsiana Kirys, Alexander V. Tuzikov +1
Structure fluctuations and conformational changes accompany all biological processes involving macromolecules. The paper presents a classification of protein residues based on the…
The role of binding entropy in the refinement of protein-ligand docking predictions: analysis based on the use of 11 scoring functions
Anatoly M. Ruvinsky
We present results of testing of the ability of eleven popular scoring functions to predict native docked positions using a recently developed method [1] for estimation the entropy…