1 citations · 1 across the 3 of their papers we have counts for
12 papers
BEAGLE 4.1: A high-performance library for computation on phylogenetic trees across diverse parallel architectures
Karthik Gangavarapu, Xiang Ji, Yucai Shao +4
Efficient evaluation of sequence data likelihoods and their high-dimensional gradients on phylogenetic trees improves inference under both maximum-likelihood and Bayesian framework…
Smoothly Time-Varying Continuous Time Markov Chains in Phylogenetics
Pratyusa Datta, Philippe Lemey, Marc A. Suchard
The dependence of evolutionary rate estimates on the timeframe of sampling poses a fundamental challenge for reconstructing evolutionary histories from molecular sequence data, whi…
Nonparametric Modeling of Continuous-Time Markov Chains
Filippo Monti, Xiang Ji, Yucai Shao +1
Inferring the infinitesimal rates of continuous-time Markov chains (CTMCs) is a central challenge in many scientific domains. This task is difficult because the number of rates gro…
Detecting Evolutionary Change-Points with Branch-Specific Substitution Models and Shrinkage Priors
Xiang Ji, Benjamin Redelings, Shuo Su +6
Branch-specific substitution models are popular for detecting evolutionary change-points, such as shifts in selective pressure. However, applying such models typically requires pri…
Non-Linear Drivers of Population Dynamics: a Nonparametric Coalescent Approach
Filippo Monti, Nuno R. Faria, Xiang Ji +3
Effective population size (Ne(t)) is a fundamental parameter in population genetics and phylodynamics that quantifies genetic diversity and reveals demographic history. Coalescent-…
PDA in Action: Ten Principles for High-Quality Multi-Site Clinical Evidence Generation
Yong Chen, Jiayi Tong, Yiwen Lu +13
Background: Distributed Research Networks (DRNs) offer significant opportunities for collaborative multi-site research and have significantly advanced healthcare research based on…