2 citations · 4 across the 6 of their papers we have counts for
6 papers
DPC: A Distributed Page Cache over CXL
Shai Bergman, Zhe Yang, Julien Eudine +4
Modern distributed file systems rely on uncoordinated, per node page caches that replicate hot data locally across the cluster. While ensuring fast local access, this architecture…
GenPairX: A Hardware-Algorithm Co-Designed Accelerator for Paired-End Read Mapping
Julien Eudine, Chu Li, Zhuo Cheng +11
Genome sequencing has become a central focus in computational biology. A genome study typically begins with sequencing, which produces millions to billions of short DNA fragments k…
MegIS: High-Performance, Energy-Efficient, and Low-Cost Metagenomic Analysis with In-Storage Processing
Nika Mansouri Ghiasi, Mohammad Sadrosadati, Harun Mustafa +9
Metagenomics has led to significant advances in many fields. Metagenomic analysis commonly involves the key tasks of determining the species present in a sample and their relative…
MetaStore: High-Performance Metagenomic Analysis via In-Storage Computing
Nika Mansouri Ghiasi, Mohammad Sadrosadati, Harun Mustafa +9
Metagenomics has led to significant advancements in many fields. Metagenomic analysis commonly involves the key tasks of determining the species present in a sample and their relat…
GateSeeder: Near-memory CPU-FPGA Acceleration of Short and Long Read Mapping
Julien Eudine, Mohammed Alser, Gagandeep Singh +2
Motivation: Read mapping is a computationally expensive process and a major bottleneck in genomics analyses. The performance of read mapping is mainly limited by the performance of…
Genome-on-Diet: Taming Large-Scale Genomic Analyses via Sparsified Genomics
Mohammed Alser, Julien Eudine, Onur Mutlu
Searching for similar genomic sequences is an essential and fundamental step in biomedical research and an overwhelming majority of genomic analyses. State-of-the-art computational…