1 citations · 3 across the 9 of their papers we have counts for
10 papers
Zero-Shot Learning with Subsequence Reordering Pretraining for Compound-Protein Interaction
Hongzhi Zhang, Zhonglie Liu, Kun Meng +6
Given the vastness of chemical space and the ongoing emergence of previously uncharacterized proteins, zero-shot compound-protein interaction (CPI) prediction better reflects the p…
Knowledge-aware contrastive heterogeneous molecular graph learning
Mukun Chen, Jia Wu, Shirui Pan +4
Molecular representation learning is pivotal in predicting molecular properties and advancing drug design. Traditional methodologies, which predominantly rely on homogeneous graph…
Text-guided multi-property molecular optimization with a diffusion language model
Yida Xiong, Kun Li, Jiameng Chen +4
Molecular optimization (MO) is a crucial stage in drug discovery in which task-oriented generated molecules are optimized to meet practical industrial requirements. Existing mainst…
Dual-perspective Cross Contrastive Learning in Graph Transformers
Zelin Yao, Chuang Liu, Xueqi Ma +5
Graph contrastive learning (GCL) is a popular method for leaning graph representations by maximizing the consistency of features across augmented views. Traditional GCL methods uti…
A Cross-Field Fusion Strategy for Drug-Target Interaction Prediction
Hongzhi Zhang, Xiuwen Gong, Shirui Pan +3
Drug-target interaction (DTI) prediction is a critical component of the drug discovery process. In the drug development engineering field, predicting novel drug-target interactions…
Regressor-free Molecule Generation to Support Drug Response Prediction
Kun Li, Xiuwen Gong, Shirui Pan +3
Drug response prediction (DRP) is a crucial phase in drug discovery, and the most important metric for its evaluation is the IC50 score. DRP results are heavily dependent on the qu…
Hi-GMAE: Hierarchical Graph Masked Autoencoders
Chuang Liu, Zelin Yao, Xueqi Ma +4
Graph Masked Autoencoders (GMAEs) have emerged as a notable self-supervised learning approach for graph-structured data. Existing GMAE models primarily focus on reconstructing node…
Exploring Sparsity in Graph Transformers
Chuang Liu, Yibing Zhan, Xueqi Ma +5
Graph Transformers (GTs) have achieved impressive results on various graph-related tasks. However, the huge computational cost of GTs hinders their deployment and application, espe…
Careful Selection and Thoughtful Discarding: Graph Explicit Pooling Utilizing Discarded Nodes
Chuang Liu, Wenhang Yu, Kuang Gao +5
Graph pooling has been increasingly recognized as crucial for Graph Neural Networks (GNNs) to facilitate hierarchical graph representation learning. Existing graph pooling methods…
Towards a Better Model with Dual Transformer for Drug Response Prediction
Kun Li, Jia Wu, Bo Du +4
GNN-based methods have achieved excellent results as a mainstream task in drug response prediction tasks in recent years. Traditional GNN methods use only the atoms in a drug molec…